SubtiBank SubtiBank
yqjC [2019-09-04 10:15:10]
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yqjC [2019-09-04 10:15:10]

unknown [SW|sporulation] protein
locus
BSU_23930
pI
5.85
mw
15.54 kDa
protein length
140 aa Sequence Blast
gene length
423 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    2,488,329 → 2,488,751

    The protein

    Protein family

  • methylmalonyl-CoA epimerase family (single member, according to UniProt)

    • Structure

  • [PDB|3OA4] (from B. halodurans, 45% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|293794B65B9EEB7F049138F73893303BABFB9A2A|yqjB]-[gene|E993FA7270DB71B055A36E305D8759BFD4C21ACF|yqjC]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [pubmed|26577401], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

    • regulatory mechanism

  • [protein|01EF886D3D004EA9B22AC5E75D50FF07D8631E68|SpoVT]: repression, [pubmed|26577401], in [regulon|01EF886D3D004EA9B22AC5E75D50FF07D8631E68|SpoVT regulon]
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    Biological materials

    Mutant

  • MGNA-C386 (yqjC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2384 NBRP B. subtilis, Japan]
  • BKE23930 (Δ[gene|E993FA7270DB71B055A36E305D8759BFD4C21ACF|yqjC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE23930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTCATCCCTGCTTTCG, downstream forward: _UP4_CCGAAAGGAGACCAACACAA
  • BKK23930 (Δ[gene|E993FA7270DB71B055A36E305D8759BFD4C21ACF|yqjC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK23930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTCATCCCTGCTTTCG, downstream forward: _UP4_CCGAAAGGAGACCAACACAA

    • References

  • 27766092,26577401